shntnu
6/30/2015 - 5:11 PM

Run sig_introspect from MATLAB

Run sig_introspect from MATLAB

MORTARPATH = '/home/unix/shsingh/work/software/mortar_20150417_e4010fd2c/mortar';
run (fullfile(MORTARPATH, 'util/usemortar'));
dbstop if error;
sig_introspect_tool( ...
'--score',  ...
'high_rep_A549_8reps_141230_ZSPCINF_n4232x978.gctx',  ...
'--sig_score',  ...
'high_rep_A549_8reps_141230_ZSPCINF_n4232x978.gctx',  ...
'--cid',  ...
'grp_files_141230/high_rep_A549_8reps/distil_ids/by_gene/high_rep_A549_8reps_A549_distil_ids.grp',  ...
'--build_id',  ...
'custom',  ...
'--column_space',  ...
'custom',  ...
'--row_space',  ...
'lm',  ...
'--query_group',  ...
'x_mutation_status,cell_id',  ...
'--annotate_from_ds',  ...
'1',  ...
'--out',  ...
'introspect_high_rep_A549_8reps_mortar_20150417_e4010fd2c');