Prints the header line and lengths of sequences in a fastq file in a tab-separated format.Example for output:@seq1 2324@seq2 1365 - Cacher Snippet

8/25/2015 - 8:17 AM

Prints the header line and lengths of sequences in a fastq file in a tab-separated format. Example for output: @seq1 2324 @seq2 1365

Prints the header line and lengths of sequences in a fastq file in a tab-separated format. Example for output: @seq1 2324 @seq2 1365

get_fastq_seq_lengths.sh

awk '{if(NR % 4==1){printf $0"\t"}else if(NR % 4==2){print length($0)}}'