genomewalker
5/10/2016 - 8:15 AM

hmmer-mpi-memento.sh

#!/bin/bash -l
#$ -P mpi45
#$ -cwd
#$ -j y
#$ -l h_rt=72:00:00
#$ -N NOG-OM
#$ -q class_a
#$ -V
#$-pe openmpi8 128
#export OMP_NUM_THREADS=64

#TASKS=/home/mpi45770/NOGs/runtime/tasks/TARA*

#./OM-RGC_nogs.sh

module load openmpi/gcc/64/1.6.4

mpirun -np $NSLOTS ~/opt/hmmer-3.1b2-mpi/bin/hmmsearch -E 1e-5 --cut_ga --mpi --domtblout ~/NOGsOM/results/all.nog.out.txt ~/NOGsOM/input/NOG.hmm ~/NOGsOM/input/OM-RGC_seq.release.faa > ~/NOGsOM/results/all.nog.log 2>&1