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# Sequel Pro doesn't actually use mysqldump, both so that it can use the   
# current connection and report progress - so I can't give you the flags   
# to replicate the behaviour exactly! 

# However, based only on the big difference in the sizes of the files   
# (and assuming you're using 0.9.3), I would bet your discrepancies/ 
# errors are in areas using data from TEXT/BLOB (or spatial) fields; if   
#so, the option you're looking for is --hex-blob . 

mysqldump -uUSERNAME -pPassword --hex-blob DATABASENAME > file.sql