danielecook
10/30/2015 - 5:04 PM

Homebrew telseq installation; Use brew install (url)

Homebrew telseq installation; Use brew install (url)

class Telseq < Formula
  desc "Program for estimating telomere length from sequence data"
  homepage "https://github.com/zd1/telseq"
  # doi "10.1093/nar/gku181"
  # tag "bioinformatics"

  url "https://github.com/zd1/telseq/archive/0.0.1.tar.gz"
  sha256 "310867d35d59b0c2e969a7733f80545209883f89330c937a2b716b00fd12d92e"

  head "https://github.com/zd1/telseq.git"

  depends_on "gcc"
  depends_on "bamtools"
  depends_on "automake"

  def install
    args = %W[PREFIX=#{prefix} CPP=#{ENV.cxx}]
    cd "src" do
      system "./autogen.sh"
      system "./configure --with-bamtools=#{Formula["bamtools"].opt_prefix}"
      system "make", "install"
    end
  end

  test do
    system "#{bin}/telseq"
  end
end