Ruby & IGV
require 'nokogiri'
tracks = []
%w{H3k4me1 H3k4me3 H3k27ac}.each do |mark|
url = "http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/supplementary/integration_data_jan2011/byDataType/signal/jan2011/bigwig/wgEncodeBroadHistoneGm12878#{mark}StdAln_2Reps.norm5.rawsignal.bw"
tracks << {path: url, color: "217,95,14", name: mark}
end
builder = Nokogiri::XML::Builder.new do |xml|
xml.Global(:genome => "hg19", :version => "3") {
xml.Resources {
tracks.each do |t|
xml.Resource(:path => t[:path])
end
}
xml.Panel {
tracks.each do |t|
xml.Track(:id => t[:path], :name => t[:name],
:color => t[:color])
end
}
}
end
puts builder.to_xml