yeban
6/18/2014 - 5:36 PM

subpart.gff

scaffold00002	repeatmasker	match	1244186	1244228	274	+	.	ID=scaffold00002:hit:1026:1.3.0.12;Name=species:R1_DPs|genus:LINE%2FR1;Target=species:R1_DPs|genus:LINE%2FR1 650 780 +
scaffold00002	repeatmasker	match_part	1244186	1244228	274	+	.	ID=scaffold00002:hsp:1026:1.3.0.12;Parent=scaffold00002:hit:1026:1.3.0.12;Target=species:R1_DPs|genus:LINE%2FR1 650 780 +
scaffold00002	repeatmasker	match	1261641	1261712	273	+	.	ID=scaffold00002:hit:1027:1.3.0.12;Name=species:GRANDE1_ZD-int|genus:LTR%2FGypsy;Target=species:GRANDE1_ZD-int|genus:LTR%2FGypsy 11010 11080 +
scaffold00002	repeatmasker	match_part	1261641	1261712	273	+	.	ID=scaffold00002:hsp:1027:1.3.0.12;Parent=scaffold00002:hit:1027:1.3.0.12;Target=species:GRANDE1_ZD-int|genus:LTR%2FGypsy 11010 11080 +
# [...]
scaffold00002	repeatrunner	protein_match	1241335	1241652	296	-	.	ID=scaffold00002:hit:1026:1.3.0.12;Name=gi|538540|pir||A40831;Target=gi|538540|pir||A40831 662 763 +
scaffold00002	repeatrunner	match_part	1241335	1241652	296	-	.	ID=scaffold00002:hsp:1026:1.3.0.12;Parent=scaffold00002:hit:1026:1.3.0.12;Target=gi|538540|pir||A40831 662 763 +
scaffold00002	repeatrunner	protein_match	1241717	1242613	952	-	.	ID=scaffold00002:hit:1027:1.3.0.12;Name=gi|538540|pir||A40831;Target=gi|538540|pir||A40831 429 665 +
scaffold00002	repeatrunner	match_part	1241717	1242613	952	-	.	ID=scaffold00002:hsp:1027:1.3.0.12;Parent=scaffold00002:hit:1027:1.3.0.12;Target=gi|538540|pir||A40831 429 665 +
# [...]
sp|Q39J12|CH602_BURS3 3 118;Gap=M116 F1
scaffold00095	protein2genome	match_part	476750	477336	1468	+	.	ID=scaffold00095:hsp:131626:3.10.0.4;Parent=scaffold00095:hit:43769:3.10.0.4;Target=sp|Q39J12|CH602_BURS3 119 313;Gap=R1 M189 D1 M6
scaffold00095	protein2genome	match_part	477695	477998	1468	+	.	ID=scaffold00095:hsp:131627:3.10.0.4;Parent=scaffold00095:hit:43769:3.10.0.4;Target=sp|Q39J12|CH602_BURS3 314 414;Gap=M101 F1
scaffold00095	protein2genome	match_part	478073	478452	1468	+	.	ID=scaffold00095:hsp:131628:3.10.0.4;Parent=scaffold00095:hit:43769:3.10.0.4;Target=sp|Q39J12|CH602_BURS3 415 543;Gap=R1 M56 I2 M71
# [...]