nievergeltlab
3/13/2017 - 4:18 PM

Get chromosome number and chunk number from file name. For ricopili.

Get chromosome number and chunk number from file name. For ricopili.

name_chromosome_chunk.sh
content_copyfile_download
  chunknum=$(echo $chunk | sed  's/.*\(chr[0-9]*_[0-9]*_[0-9]*\).*/\1/')
  chrnum=$(echo $chunk | sed  's/.*\(chr[0-9]*\).*/\1/')