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SELECT * FROM `wp_posts` o
LEFT OUTER JOIN `wp_posts` r
ON o.post_parent = r.ID
WHERE r.id IS null AND o.post_type = 'product_variation'

DELETE o FROM `wp_posts` o
LEFT OUTER JOIN `wp_posts` r
ON o.post_parent = r.ID
WHERE r.id IS null AND o.post_type = 'product_variation'