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// For complete examples and data files, please go to https://github.com/groupdocs-comparison/GroupDocs.Comparison-for-Java
InputStream source = new FileInputStream(Utilities.sourcePath + sourceFile);
InputStream target = new FileInputStream(Utilities.targetPath + targetFile);

String sourcePassword = Utilities.sourcePassword;
String targetPassword = Utilities.targetPassword;

Comparer comparer = new Comparer();
ICompareResult result = comparer.compare(source, sourcePassword, target, targetPassword, new ComparisonSettings());
result.saveDocument(Utilities.outputFileName(extension));