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Paste this into Chrome's "Preferences" file, just after "countryid_at_install" to enable chrome to open mailto links in gmail. On Ubuntu 12.04 this is located in ~/.config/google-chrome/Default/Preferences.

   "custom_handlers": {
      "enabled": true,
      "registered_protocol_handlers": [ {
         "default": true,
         "protocol": "mailto",
         "title": "Gmail",
         "url": "https://mail.google.com/mail/ca/?extsrc=mailto&url=%s"
      } ]
   },